recipe mercat2

versatile k-mer counter and diversity estimator for database independent property analysis (DIPA) for multi-omic analysis



BSD / BSD-3-Clause



package mercat2

(downloads) docker_mercat2



depends configargparse:

depends dominate:

depends fastp:

depends fastqc:

depends grpcio:

depends humanize:

depends metaomestats:

depends numpy:

depends pandas:

depends plotly:

depends prodigal:

depends psutil:

depends python:


depends python-kaleido:

depends ray-core:

depends ray-dashboard:

depends ray-default:

depends scikit-bio:

depends scikit-learn:

depends scipy:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mercat2

and update with::

   mamba update mercat2

To create a new environment, run:

mamba create --name myenvname mercat2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `mercat2/tags`_ for valid values for ``<tag>``)

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