recipe merfin

Improved variant filtering and polishing via k-mer validation.

Homepage:

https://github.com/arangrhie/merfin

License:

Apache-2.0

Recipe:

/merfin/meta.yaml

package merfin

versions:

1.0-2,  1.0-1,  1.0-0

depends bzip2:

>=1.0.8

depends gzip:

>=1.11

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends meryl:

>=1.3,<2000

depends pigz:

>=2.6

depends xz:

>=5.2.5

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install merfin

and update with::

   mamba update merfin

To create a new environment, run:

mamba create --name myenvname merfin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/merfin:<tag>

(see `merfin/tags`_ for valid values for ``<tag>``)

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