recipe merge-gbk-records

Turn multiple GenBank records (either in multiple files or a single multi-record file) into a single record

Homepage:

http://github.com/kblin/merge-gbk-records

License:

Apache / Apache-2.0

Recipe:

/merge-gbk-records/meta.yaml

A small script to turn multiple GenBank records (either in multiple files or a single multi-record file) into a single record. Sequences are merged by concatenating them in order, and putting a spacer sequence between them. Spacer sequence length can be given in kbp. It is possible to pick an all-N spacer, or using a spacer consisting of all-frame stop codons.

package merge-gbk-records

versions:

0.2.0-0

depends biopython:

>=1.79

depends python:

>=3.7

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install merge-gbk-records

and update with::

   mamba update merge-gbk-records

To create a new environment, run:

mamba create --name myenvname merge-gbk-records

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/merge-gbk-records:<tag>

(see `merge-gbk-records/tags`_ for valid values for ``<tag>``)

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