recipe merqury

Evaluate genome assemblies with k-mers and more.

Homepage:

https://github.com/marbl/merqury

License:

PUBLIC DOMAIN

Recipe:

/merqury/meta.yaml

Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference. Merqury provides a set of tools for this purpose.

package merqury

Versions:

1.3-1,  1.3-0,  1.1-3,  1.1-2,  1.1-1,  1.1-0,  v1.0-0

Depends:

• bedtools >=2.29.2

• meryl 1.3.*

• mscorefonts

• openjdk >=11.0.1

• r-argparse >=2.0.1

• r-base >=4

• r-ggplot2 >=3.3.2

• r-scales >=1.1.1

• samtools >=1.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install merqury

and update with:

conda update merqury

or use the docker container:

docker pull quay.io/biocontainers/merqury:<tag>

(see merqury/tags for valid values for <tag>)

Download stats

Link to this page

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