recipe meta_eukaryome_detect

Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.

Homepage:

https://github.com/grp-bork/meta_eukaryome_detect

Documentation:

https://grp-bork.embl-community.io/grp-microbiome-astrology/meta_eukaryome_detect/

License:

MIT / MIT License

Recipe:

/meta_eukaryome_detect/meta.yaml

package meta_eukaryome_detect

versions:

0.1.1-0

depends ngless:

depends pandas:

>=2.0

depends python:

depends requests:

depends samtools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install meta_eukaryome_detect

and update with::

   mamba update meta_eukaryome_detect

To create a new environment, run:

mamba create --name myenvname meta_eukaryome_detect

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/meta_eukaryome_detect:<tag>

(see `meta_eukaryome_detect/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/meta_eukaryome_detect/README.html)