recipe metabinkit

Set of programs to perform taxonomic binning.

Homepage:

https://github.com/envmetagen/metabinkit

License:

GPL / GPL-3

Recipe:

/metabinkit/meta.yaml

Links:

biotools: metabinkit, doi: 10.5281/zenodo.3855032

package metabinkit

versions:

0.2.3-3,  0.2.3-2,  0.2.3-1,  0.2.3-0,  0.2.2-5,  0.2.2-4,  0.2.2-3,  0.2.2-2,  0.2.2-1, 

0.2.3-3,  0.2.3-2,  0.2.3-1,  0.2.3-0,  0.2.2-5,  0.2.2-4,  0.2.2-3,  0.2.2-2,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.8-0,  0.1.7-0,  0.1.6-0

depends blast:

>=2.9.0

depends bzip2:

depends curl:

depends entrez-direct:

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends pcre:

>=8.45,<9.0a0

depends perl:

depends perl-archive-tar:

depends perl-json:

depends perl-list-moreutils:

depends r-base:

>=4.4,<4.5.0a0

depends r-data.table:

depends r-matrix:

depends r-optparse:

depends r-stringr:

depends taxonkit:

0.6.0.*

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metabinkit

and update with::

   mamba update metabinkit

To create a new environment, run:

mamba create --name myenvname metabinkit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metabinkit:<tag>

(see `metabinkit/tags`_ for valid values for ``<tag>``)

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