recipe metabinkit

Set of programs to perform taxonomic binning.

Homepage:

https://github.com/envmetagen/metabinkit

License:

GPL / GPL-3

Recipe:

/metabinkit/meta.yaml

Links:

biotools: metabinkit, doi: 10.5281/zenodo.3855032

package metabinkit

Versions:

0.2.2-5,  0.2.2-4,  0.2.2-3,  0.2.2-2,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.8-0, 

0.2.2-5,  0.2.2-4,  0.2.2-3,  0.2.2-2,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.8-0,  0.1.7-0,  0.1.6-0

Depends:

• blast >=2.9.0

• bzip2 >=1.0.8,<2.0a0

• curl >=7.88.1,<8.0a0

• entrez-direct

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• pcre >=8.45,<9.0a0

• perl

• perl-archive-tar

• perl-json

• perl-list-moreutils

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-matrix

• r-optparse

• r-stringr

• taxonkit 0.6.0.*

• zlib >=1.2.13,<1.3.0a0

Required By:

• msi

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metabinkit

and update with:

conda update metabinkit

or use the docker container:

docker pull quay.io/biocontainers/metabinkit:<tag>

(see metabinkit/tags for valid values for <tag>)

Download stats

Link to this page

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