recipe metabinner

Ensemble binning method to recover individual genomes from complex microbial communities

Homepage:

https://github.com/ziyewang/MetaBinner

License:

BSD

Recipe:

/metabinner/meta.yaml

package metabinner

Versions:

1.4.4-0,  1.4.3-0,  1.4.2-0

Depends:

• biolib 0.1.6.*

• biopython 1.76.*

• bwa 0.7.17.*

• checkm-genome 1.1.3.*

• click 7.1.2.*

• fraggenescan 1.31.*

• hmmer 3.1b2.*

• numpy 1.18.1.*

• pandas 1.0.1.*

• pplacer 1.1.alpha19.*

• prodigal 2.6.3.*

• python 3.7.6.*

• samtools 1.9.*

• scikit-learn 0.22.1.*

• scipy 1.4.1.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metabinner

and update with:

conda update metabinner

or use the docker container:

docker pull quay.io/biocontainers/metabinner:<tag>

(see metabinner/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metabinner/README.html)