- recipe metabolights-utils
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
- Homepage:
- License:
Apache-2.0
- Recipe:
- package metabolights-utils¶
- versions:
1.1.6-0
,1.1.5-0
,1.1.3-0
,1.1.2-0
,1.1.1-0
,1.1.0-0
- depends beautifulsoup4:
>=4.12.3,<5.0.0
- depends click:
>=8.1.7,<9.0.0
- depends httpx:
>=0.27.0,<0.28.0
- depends jsonpath-ng:
>=1.6.1,<2.0.0
- depends jsonschema:
>=4.22.0,<5.0.0
- depends pydantic:
>=2.0.0,<3.0.0
- depends pydantic-settings:
>=2.0.3,<3.0.0
- depends python:
>=3.8,<4.0
- depends python-dateutil:
>=2.9.0,<3.0.0
- depends unidecode:
>=1.3.8,<2.0.0
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install metabolights-utils and update with:: mamba update metabolights-utils
To create a new environment, run:
mamba create --name myenvname metabolights-utils
with
myenvname
being a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/metabolights-utils:<tag> (see `metabolights-utils/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metabolights-utils/README.html)