recipe metabolights-utils

MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.

Homepage:

https://github.com/EBI-Metabolights/metabolights-utils

License:

Apache-2.0

Recipe:

/metabolights-utils/meta.yaml

package metabolights-utils

versions:

1.3.1-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.12-0,  1.1.11-0,  1.1.10-0,  1.1.9-0,  1.1.8-0, 

1.3.1-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.12-0,  1.1.11-0,  1.1.10-0,  1.1.9-0,  1.1.8-0,  1.1.7-0,  1.1.6-0,  1.1.5-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0

depends beautifulsoup4:

>=4.12.3,<5.0.0

depends click:

>=8.1.7,<9.0.0

depends httpx:

>=0.27.0,<0.28.0

depends jsonpath-ng:

>=1.6.1,<2.0.0

depends jsonschema:

>=4.22.0,<5.0.0

depends pydantic:

>=2.0.0,<3.0.0

depends pydantic-settings:

>=2.0.3,<3.0.0

depends python:

>=3.8,<4.0

depends python-dateutil:

>=2.9.0,<3.0.0

depends unidecode:

>=1.3.8,<2.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metabolights-utils

and update with::

   mamba update metabolights-utils

To create a new environment, run:

mamba create --name myenvname metabolights-utils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metabolights-utils:<tag>

(see `metabolights-utils/tags`_ for valid values for ``<tag>``)

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