recipe metachip

HGT detection pipeline

Homepage:

https://github.com/songweizhi/MetaCHIP

License:

GPL3 / GPL3+

Recipe:

/metachip/meta.yaml

Links:

doi: 10.1186/s40168-019-0649-y

package metachip

Versions:

1.10.12-0,  1.10.10-0,  1.10.9-0,  1.10.8-0,  1.10.6-0,  1.10.5-0,  1.10.4-0,  1.10.3-0,  1.10.2-0, 

1.10.12-0,  1.10.10-0,  1.10.9-0,  1.10.8-0,  1.10.6-0,  1.10.5-0,  1.10.4-0,  1.10.3-0,  1.10.2-0,  1.10.0-0

Depends:

• biopython <=1.77

• blast

• ete3

• fasttree

• hmmer

• mafft

• matplotlib-base

• numpy

• prodigal

• python

• r-ape

• r-base

• r-circlize

• r-optparse

• reportlab

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metachip

and update with:

conda update metachip

or use the docker container:

docker pull quay.io/biocontainers/metachip:<tag>

(see metachip/tags for valid values for <tag>)

Download stats

Link to this page

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