recipe metacompass

MetaCompass: Reference-guided Assembly of Metagenomes.

Homepage:

https://github.com/marbl/MetaCompass

Documentation:

https://github.com/marbl/MetaCompass/wiki

License:

Artistic-License-2.0

Recipe:

/metacompass/meta.yaml

Links:

biotools: MetaCompass, doi: 10.1101/212506

package metacompass

(downloads) docker_metacompass

versions:

1.12-0

depends blast:

>=2.4.0

depends bowtie2:

>=2.2.5

depends libgcc:

>=13

depends libstdcxx:

>=13

depends megahit:

>=1.0.6

depends openjdk:

>=7

depends perl:

>=5.16

depends python:

>=3.1

depends samtools:

>=1.12

depends snakemake-minimal:

>=3.7.1

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metacompass

and update with::

   mamba update metacompass

To create a new environment, run:

mamba create --name myenvname metacompass

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metacompass:<tag>

(see `metacompass/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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