recipe metamate

metaMATE: your metabarcoding friend!

Homepage:

https://github.com/tjcreedy/metamate

License:

GPL-3.0

Recipe:

/metamate/meta.yaml

package metamate

versions:

0.4.3-0

depends bbmap:

depends biopython:

>=1.76

depends mafft:

depends pysam:

depends python:

>=3.6

depends r-base:

>=4.3,<4.4.0a0

depends scipy:

>=1.4.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metamate

and update with::

   mamba update metamate

To create a new environment, run:

mamba create --name myenvname metamate

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metamate:<tag>

(see `metamate/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metamate/README.html)