recipe metamdbg

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

Homepage:

https://github.com/GaetanBenoitDev/metaMDBG

License:

MIT

Recipe:

/metamdbg/meta.yaml

package metamdbg

versions:

0.3-0

depends gsl:

2.7 he838d99_0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends minimap2:

2.24.*

depends openmp:

depends samtools:

1.6.*

depends wfmash:

0.8.2.*

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metamdbg

and update with::

   mamba update metamdbg

To create a new environment, run:

mamba create --name myenvname metamdbg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metamdbg:<tag>

(see `metamdbg/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metamdbg/README.html)