recipe metamobilepicker

MetaMobilePicker: identification of MGEs and ARGs based in metagenomic samples

Homepage:

https://gitlab.com/jkerkvliet/metamobilepicker

Documentation:

https://metamobilepicker.nl

License:

MIT

Recipe:

/metamobilepicker/meta.yaml

package metamobilepicker

versions:

0.7.3-0,  0.7.2-0

depends biopython:

depends click:

depends mamba:

depends python:

>=3.10

depends pyyaml:

depends rich:

depends setuptools:

depends setuptools_scm_git_archive:

depends snakemake:

7.8.5

depends tabulate:

0.8.10

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metamobilepicker

and update with::

   mamba update metamobilepicker

To create a new environment, run:

mamba create --name myenvname metamobilepicker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metamobilepicker:<tag>

(see `metamobilepicker/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metamobilepicker/README.html)