- recipe metaphlan
Metagenomic Phylogenetic Analysis
- Homepage
- License
MIT / MIT License
- Recipe
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data with species level resolution. From version 2.0 MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.
- package metaphlan¶
-
- Versions
3.0.14-0
,3.0.13-0
,3.0.12-0
,3.0.11-0
,3.0.10-0
,3.0.9-0
,3.0.8-0
,3.0.7-2
,3.0.7-1
,3.0.14-0
,3.0.13-0
,3.0.12-0
,3.0.11-0
,3.0.10-0
,3.0.9-0
,3.0.8-0
,3.0.7-2
,3.0.7-1
,3.0.7-0
,3.0.6-0
,3.0.5-0
,3.0.4-1
,3.0.4-0
,3.0.3-0
,3.0.2-0
,3.0.1-0
,3.0-4
,3.0-3
,3.0-2
,3.0-1
,3.0-0
,3.0.0.alpha-1
,3.0.0.alpha-0
,2.8.1-1
,2.8.1-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install metaphlan
and update with:
conda update metaphlan
or use the docker container:
docker pull quay.io/biocontainers/metaphlan:<tag>
(see metaphlan/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metaphlan/README.html)