recipe metaphor

Metaphor - Metagenomic Pipeline for Short Reads

Homepage:

https://github.com/vinisalazar/metaphor

Documentation:

https://metaphor-workflow.readthedocs.io/

License:

MIT / MIT

Recipe:

/metaphor/meta.yaml

# Metaphor - Metagenomic Pipeline for sHOrt Reads

Metaphor is a Snakemake-based, general-purpose workflow for assembly and binning of metagenomes. To learn how to use it, please refer to the [docs page](https://metaphor-workflow.readthedocs.io/).

package metaphor

(downloads) docker_metaphor

versions:
1.7.14-0,  1.7.13-1,  1.7.13-0,  1.7.12-0,  1.7.11-0,  1.7.10-0,  1.7.9-1,  1.7.9-0,  1.7.8-0, 

1.7.14-0,  1.7.13-1,  1.7.13-0,  1.7.12-0,  1.7.11-0,  1.7.10-0,  1.7.9-1,  1.7.9-0,  1.7.8-0,  1.7.7-1,  1.7.7-0,  1.7.6-0,  1.7.5-0,  1.7.4-0,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.6.2-0,  1.6.1-0,  1.6.0-0,  1.5.2-0,  1.5.1-0,  1.5.0-0,  1.4.1-0,  1.4.0-0,  1.3.1-0

depends jinja2:

depends networkx:

depends pandas:

depends python:

>=3.9,<3.12

depends pyyaml:

depends requests:

depends snakemake-minimal:

>=7.5,<8.0

depends snakemake-wrapper-utils:

depends tqdm:

depends zstandard:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaphor

and update with::

   mamba update metaphor

To create a new environment, run:

mamba create --name myenvname metaphor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaphor:<tag>

(see `metaphor/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaphor/README.html)