recipe metaplatanus

MetaPlatanus: A hybrid metagenome assembler

Homepage:

https://github.com/rkajitani/metaplatanus

License:

GPL / GPL-3.0

Recipe:

/metaplatanus/meta.yaml

package metaplatanus

versions:

1.3.1-1,  1.3.1-0,  1.3.0-1,  1.3.0-0

depends bwa:

>=0.7.17

depends bzip2:

>=1.0.8,<2.0a0

depends file:

depends gzip:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends megahit:

>=1.2.9

depends metabat2:

>=2.12.1

depends minimap2:

>=2.17

depends openmp:

depends perl:

>=5

depends psutil:

>=5.8.0

depends racon:

>=1.4.20

depends samtools:

>=1.9

depends seqkit:

>=0.16.1

depends tgsgapcloser:

>=1.0.3

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaplatanus

and update with::

   mamba update metaplatanus

To create a new environment, run:

mamba create --name myenvname metaplatanus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaplatanus:<tag>

(see `metaplatanus/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaplatanus/README.html)