recipe metaplatanus

MetaPlatanus: A hybrid metagenome assembler



GPL / GPL-3.0



package metaplatanus

(downloads) docker_metaplatanus



depends bwa:


depends bzip2:


depends file:

depends gzip:

depends libgcc-ng:


depends libstdcxx-ng:


depends libzlib:


depends megahit:


depends metabat2:


depends minimap2:


depends openmp:

depends perl:


depends psutil:


depends racon:


depends samtools:


depends seqkit:


depends tgsgapcloser:


depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaplatanus

and update with::

   mamba update metaplatanus

To create a new environment, run:

mamba create --name myenvname metaplatanus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `metaplatanus/tags`_ for valid values for ``<tag>``)

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