recipe metaplex

Read Processing and Quality Control Toolkit for Dual-Indexed Metabarcoding

Homepage:

https://github.com/NGabry/MetaPlex

License:

BSD-3-Clause

Recipe:

/metaplex/meta.yaml

package metaplex

(downloads) docker_metaplex

versions:

1.1.0-0,  1.0.0-0,  0.2.0-0

depends biom-format:

depends biopython:

depends cutadapt:

depends numpy:

depends pandas:

depends python:

depends samtools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaplex

and update with::

   mamba update metaplex

To create a new environment, run:

mamba create --name myenvname metaplex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaplex:<tag>

(see `metaplex/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/metaplex/README.html)