recipe metaprokka

A fork of Prokka using Prodigal-GV for phage annotation and metagenome/metavirome tweaks

Homepage:

https://github.com/telatin/metaprokka

License:

GPL / GPL-3.0-only

Recipe:

/metaprokka/meta.yaml

Links:

biotools: metaprokka

package metaprokka

(downloads) docker_metaprokka

versions:

1.15.0-0,  1.14.6_1-3,  1.14.6_1-2,  1.14.6_1-1,  1.14.6_1-0

depends perl:

>=5.32.1,<6.0a0 *_perl5

depends perl-fastx-reader:

>=1.11.0

depends prodigal-gv:

>=2.11.0

depends prokka:

1.14.6.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaprokka

and update with::

   mamba update metaprokka

To create a new environment, run:

mamba create --name myenvname metaprokka

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/metaprokka:<tag>

(see `metaprokka/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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