recipe metaseq-all

Meta-package for metaseq including bedtools and UCSC tools



The license for this meta-package is MIT; individual tools vary



package metaseq-all

(downloads) docker_metaseq-all



depends bedtools:

depends metaseq:

depends samtools:

depends ucsc-bedgraphtobigwig:

depends ucsc-bedtobigbed:

depends ucsc-bigbedtobed:

depends ucsc-bigwigsummary:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metaseq-all

and update with::

   mamba update metaseq-all

To create a new environment, run:

mamba create --name myenvname metaseq-all

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `metaseq-all/tags`_ for valid values for ``<tag>``)

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