recipe metavelvet-sl-pipeline

Perl libraries that run the full pipeline for metavelvet-sl

Homepage

http://metavelvet.dna.bio.keio.ac.jp/MSL.html

License

Recipe

/metavelvet-sl-pipeline/meta.yaml

package metavelvet-sl-pipeline

(downloads) docker_metavelvet-sl-pipeline

Versions

1.0-0

Depends dwgsim

Depends libgcc

Depends libsvm

Depends metaphlan2

Depends metavelvet-sl

Depends metavelvet-sl-feature-extraction

Depends perl

5.22.0*

Depends perl-app-cpanminus

Depends perl-module-build

Depends velvet

Depends zlib

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metavelvet-sl-pipeline

and update with:

conda update metavelvet-sl-pipeline

or use the docker container:

docker pull quay.io/biocontainers/metavelvet-sl-pipeline:<tag>

(see metavelvet-sl-pipeline/tags for valid values for <tag>)