recipe metavelvet-sl-pipeline

Perl libraries that run the full pipeline for metavelvet-sl





package metavelvet-sl-pipeline

(downloads) docker_metavelvet-sl-pipeline



depends dwgsim:

depends libgcc:

depends libsvm:

depends metaphlan2:

depends metavelvet-sl:

depends metavelvet-sl-feature-extraction:

depends perl:


depends perl-app-cpanminus:

depends perl-module-build:

depends velvet:

depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install metavelvet-sl-pipeline

and update with::

   mamba update metavelvet-sl-pipeline

To create a new environment, run:

mamba create --name myenvname metavelvet-sl-pipeline

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `metavelvet-sl-pipeline/tags`_ for valid values for ``<tag>``)

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