recipe metawrap-mg

MetaWRAP is a pipeline for genome-resolved metagenomic data analysis

Homepage:

https://github.com/bxlab/metaWRAP

License:

MIT

Recipe:

/metawrap-mg/meta.yaml

package metawrap-mg

Versions:

1.3.0-1,  1.3.0-0

Depends:

• biopython 1.68.*

• blas 2.5 mkl

• blast 2.6.0.*

• bmtagger 3.101.*

• bowtie2 2.3.5.*

• bwa 0.7.17.*

• checkm-genome 1.0.12.*

• concoct 1.0.0.*

• fastqc 0.11.8.*

• kraken 1.1.*

• kraken2 2.0.*

• krona 2.7.*

• matplotlib-base 2.2.3.*

• maxbin2 2.2.6.*

• megahit 1.1.3.*

• metabat2 2.12.1.*

• openssl 1.0.*

• pandas 0.24.2.*

• perl-bioperl

• pplacer 1.1.alpha19.*

• prokka 1.*

• python 2.7.15.*

• quast 5.0.2.*

• r-ggplot2 3.1.0.*

• r-recommended 3.5.1.*

• r-reshape2

• salmon 0.13.1.*

• samtools 1.9.*

• seaborn 0.9.0.*

• spades 3.13.0.*

• taxator-tk 1.3.3e.*

• trim-galore 0.5.0.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install metawrap-mg

and update with:

conda update metawrap-mg

or use the docker container:

docker pull quay.io/biocontainers/metawrap-mg:<tag>

(see metawrap-mg/tags for valid values for <tag>)

Download stats

Link to this page

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