- recipe metawrap-mg
MetaWRAP is a pipeline for genome-resolved metagenomic data analysis
- Homepage:
- License:
MIT
- Recipe:
- package metawrap-mg¶
-
- Versions:
1.3.0-1
,1.3.0-0
- Depends:
biopython
1.68.*
blas
2.5 mkl
blast
2.6.0.*
bmtagger
3.101.*
bowtie2
2.3.5.*
bwa
0.7.17.*
checkm-genome
1.0.12.*
concoct
1.0.0.*
fastqc
0.11.8.*
kraken
1.1.*
kraken2
2.0.*
krona
2.7.*
matplotlib-base
2.2.3.*
maxbin2
2.2.6.*
megahit
1.1.3.*
metabat2
2.12.1.*
openssl
1.0.*
pandas
0.24.2.*
pplacer
1.1.alpha19.*
prokka
1.*
python
2.7.15.*
quast
5.0.2.*
r-ggplot2
3.1.0.*
r-recommended
3.5.1.*
salmon
0.13.1.*
samtools
1.9.*
seaborn
0.9.0.*
spades
3.13.0.*
taxator-tk
1.3.3e.*
trim-galore
0.5.0.*
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install metawrap-mg
and update with:
conda update metawrap-mg
or use the docker container:
docker pull quay.io/biocontainers/metawrap-mg:<tag>
(see metawrap-mg/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/metawrap-mg/README.html)