recipe methphaser

MethPhaser: methylation-based haplotype phasing of human genomes

Homepage:

https://github.com/treangenlab/methphaser

License:

MIT License

Recipe:

/methphaser/meta.yaml

package methphaser

versions:

0.0.3-0

depends matplotlib-base:

depends pandas:

depends pysam:

depends scipy:

depends seaborn:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install methphaser

and update with::

   mamba update methphaser

To create a new environment, run:

mamba create --name myenvname methphaser

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/methphaser:<tag>

(see `methphaser/tags`_ for valid values for ``<tag>``)

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Link to this page

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