recipe methurator

Python package designed to estimate sequencing saturation for reduced-representation bisulfite sequencing (RRBS) data.

Homepage:

https://github.com/VIBTOBIlab/methurator

License:

MIT

Recipe:

/methurator/meta.yaml

package methurator

versions:

0.1.6-0,  0.1.5-0

depends htslib:

1.21.*

depends matplotlib-base:

depends methyldackel:

0.6.1.*

depends numpy:

depends packaging:

>=24

depends pandas:

depends plotly:

depends pyfaidx:

depends pysam:

depends python:

>=3.10,<3.14

depends rich:

depends rich-click:

depends samtools:

1.21.*

depends scipy:

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install methurator

and update with::

   mamba update methurator

To create a new environment, run:

mamba create --name myenvname methurator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/methurator:<tag>

(see `methurator/tags`_ for valid values for ``<tag>``)

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