recipe methylmap

Plotting tool for population-scale nucleotide modifications

Homepage:

https://github.com/EliseCoopman/methylmap

License:

MIT / MIT

Recipe:

/methylmap/meta.yaml

Links:

doi: 10.1101/2022.11.28.518239

package methylmap

versions:

0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-0,  0.4.6-0,  0.4.5-0,  0.3.5-0,  0.3.4-0,  0.2.3-0

depends dash:

depends dash-bootstrap-components:

depends numpy:

>=1.14.3

depends ont-modkit:

depends pandas:

>=0.23.4

depends plotly:

>=5.4.0

depends pyranges:

>=0.0.77

depends python:

>=3

depends scipy:

depends tabix:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install methylmap

and update with::

   mamba update methylmap

To create a new environment, run:

mamba create --name myenvname methylmap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/methylmap:<tag>

(see `methylmap/tags`_ for valid values for ``<tag>``)

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