- recipe methylpy
Bisulfite sequencing data processing and differential methylation analysis
- Homepage:
- Documentation:
https://github.com/yupenghe/methylpy/blob/methylpy/tutorial/tutorial.md
- License:
APACHE / Apache-2.0
- Recipe:
- Links:
doi: 10.1038/nature14465
- package methylpy¶
- versions:
1.4.7-0,1.4.3-1,1.4.3-0,1.4.2-0,1.4.1-0- depends bowtie:
- depends bowtie2:
- depends cutadapt:
>=1.9- depends gsl:
>=2.7,<2.8.0a0- depends libgcc-ng:
>=12- depends libstdcxx-ng:
>=12- depends minimap2:
- depends numpy:
>=1.6.1- depends openjdk:
- depends picard:
>=2.10.8- depends pysam:
>=0.5.3- depends python:
>=3.10,<3.11.0a0- depends python_abi:
3.10.* *_cp310- depends samtools:
>=1.3- depends scipy:
>=0.10.0- depends ucsc-wigtobigwig:
- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install methylpy and update with:: mamba update methylpy
To create a new environment, run:
mamba create --name myenvname methylpy
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/methylpy:<tag> (see `methylpy/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/methylpy/README.html)
