recipe methylpy

Bisulfite sequencing data processing and differential methylation analysis

Homepage:

https://github.com/yupenghe/methylpy

License:

APACHE / Apache 2.0

Recipe:

/methylpy/meta.yaml

Links:

doi: 10.1038/nature14465

package methylpy

Versions:

1.4.3-1,  1.4.3-0,  1.4.2-0,  1.4.1-0

Depends:

• bowtie

• bowtie2

• cutadapt >=1.9

• gsl >=2.6,<2.7.0a0

• libcxx >=9.0.1

• minimap2

• numpy >=1.6.1

• openjdk

• picard >=2.10.8

• pysam >=0.5.3

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• samtools >=1.3

• scipy >=0.10.0

• ucsc-wigtobigwig

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install methylpy

and update with:

conda update methylpy

or use the docker container:

docker pull quay.io/biocontainers/methylpy:<tag>

(see methylpy/tags for valid values for <tag>)

Download stats

Link to this page

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