recipe mg-toolkit

Metagenomics toolkit.

Homepage:

https://www.ebi.ac.uk/metagenomics

Developer docs:

https://github.com/EBI-metagenomics/emg-toolkit

License:

APACHE / Apache-2.0

Recipe:

/mg-toolkit/meta.yaml

Links:

biotools: MGnify

package mg-toolkit

versions:

0.10.4-0,  0.10.1-0,  0.10.0-0,  0.9.1-0

depends jsonapi-client:

>=0.9.9

depends pandas:

2.0.3

depends python:

>=3.8

depends requests:

>=2.31.0

depends tqdm:

>=4.49.0

depends urllib3:

>=2.2.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mg-toolkit

and update with::

   mamba update mg-toolkit

To create a new environment, run:

mamba create --name myenvname mg-toolkit

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mg-toolkit:<tag>

(see `mg-toolkit/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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