recipe mgca

Microbial genome component and annotation pipeline

Homepage:

https://github.com/liaochenlanruo/mgca/blob/master/README.md

Documentation:

https://liaochenlanruo.fun/mgca/

Developer docs:

https://github.com/liaochenlanruo/mgca/tree/master

License:

GPL / GPLv3

Recipe:

/mgca/meta.yaml

Links:

biotools: mgca

Microbial genome component and annotation pipeline.

package mgca

Versions:

0.0.0-0

Depends:

• bakta 1.4.0.*

• eggnog-mapper 2.1.7.*

• emboss

• islandpath 1.0.6.*

• lastz 1.04.15.*

• mummer4 4.0.0rc1.*

• opfi 0.1.2.*

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bioperl

• phispy 4.2.21.*

• r-ggplot2

• repeatmasker 4.1.2.p1.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mgca

and update with:

conda update mgca

or use the docker container:

docker pull quay.io/biocontainers/mgca:<tag>

(see mgca/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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