- recipe mgkit
Metagenomics Framework
- Homepage:
- License:
GPL2 / GPL-2.0-or-later
- Recipe:
- Links:
biotools: mgkit, doi: 10.6084/m9.figshare.1588384
- package mgkit¶
- versions:
0.5.8-3,0.5.8-2,0.5.8-1,0.5.8-0,0.5.6-1,0.5.6-0,0.5.5-0,0.5.4-0,0.5.3-0,0.5.8-3,0.5.8-2,0.5.8-1,0.5.8-0,0.5.6-1,0.5.6-0,0.5.5-0,0.5.4-0,0.5.3-0,0.5.2-0,0.5.1-0,0.5.0-0,0.4.3-1,0.4.3-0,0.4.2-0,0.4.1-0,0.4.0-0,0.3.4-0,0.3.3-0,0.3.0-0,0.2.2-0- depends click:
>=6- depends future:
- depends htseq:
>=0.9.1- depends libgcc-ng:
>=12- depends matplotlib-base:
>=2- depends msgpack-python:
>=0.5.6- depends networkx:
- depends numpy:
>=1.9.2- depends pandas:
>=1.1.3- depends pyarrow:
>=2.0.0- depends pymongo:
>=3.1.1- depends pysam:
>=0.14- depends pytables:
>=3.4.2- depends python:
>=3.8,<3.9.0a0- depends python_abi:
3.8.* *_cp38- depends pyvcf:
>=0.6.0- depends requests:
- depends scipy:
>=0.15.1- depends semidbm:
>=0.5.1- depends statsmodels:
>=0.12- depends tqdm:
>=4.0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install mgkit and update with:: mamba update mgkit
To create a new environment, run:
mamba create --name myenvname mgkit
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/mgkit:<tag> (see `mgkit/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
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[](http://bioconda.github.io/recipes/mgkit/README.html)
