recipe mhg

MHG is an annotation-free graph-based tool to merge and partition homologous groups.

Homepage:

https://github.com/NakhlehLab/Maximal-Homologous-Groups

License:

MIT

Recipe:

/mhg/meta.yaml

package mhg

(downloads) docker_mhg

versions:

1.1.0-0,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.0.3-0

depends bedtools:

depends biopython:

depends blast:

depends networkx:

depends numpy:

>=1.11

depends pandas:

>=1.1.3

depends python:

>=3.6,<3.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mhg

and update with::

   mamba update mhg

To create a new environment, run:

mamba create --name myenvname mhg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mhg:<tag>

(see `mhg/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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