recipe micom

Microbial community modeling based on cobrapy.

Homepage:

https://github.com/micom-dev/micom

License:

APACHE / Apache-2.0

Recipe:

/micom/meta.yaml

package micom

versions:

0.37.0-0,  0.36.4-0,  0.36.3-0,  0.36.2-0,  0.36.1-0,  0.36.0-0,  0.35.0-0,  0.34.1-0,  0.33.2-0, 

0.37.0-0,  0.36.4-0,  0.36.3-0,  0.36.2-0,  0.36.1-0,  0.36.0-0,  0.35.0-0,  0.34.1-0,  0.33.2-0,  0.33.1-0,  0.33.0-0,  0.32.5-0,  0.32.4-0,  0.32.2-0,  0.32.0-0,  0.31.4-0,  0.31.3-0,  0.30.5-0,  0.30.4-0,  0.29.6-0,  0.29.5-0,  0.28.0-0,  0.26.0-0

depends cobra:

>=0.17.1

depends jinja2:

>=2.10.0

depends osqp:

>=0.6.2

depends python:

>=3

depends python-symengine:

>=0.6.1

depends scikit-learn:

>=0.22.0

depends scipy:

>=1.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install micom

and update with::

   mamba update micom

To create a new environment, run:

mamba create --name myenvname micom

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/micom:<tag>

(see `micom/tags`_ for valid values for ``<tag>``)

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/micom/README.html)