Package Recipe 'micro_razers'

recipe micro_razers

MicroRazerS - Rapid Alignment of Small RNA Reads

Homepage:: https://github.com/seqan/seqan/tree/seqan-v2.1.1/apps/micro_razers
License:: GPLv3
Recipe:: /micro_razers/meta.yaml

package micro_razers¶

Versions:

1.0.6-8, 1.0.6-7, 1.0.6-6, 1.0.6-5, 1.0.6-4, 1.0.6-3, 1.0.6-2, 1.0.6-1, 1.0.6-0

Depends:

on bzip2 >=1.0.8,<2.0a0
on libgcc >=13
on libstdcxx >=13
on libzlib >=1.3.1,<2.0a0
on zlib

Additional platforms:

Installation¶

You need a conda-compatible package manager (currently either pixi, conda, or micromamba) and the Bioconda channel already activated (see Usage). Below, we show how to install with either pixi or conda (for micromamba and mamba, commands are essentially the same as with conda).

Pixi¶

With pixi installed and the Bioconda channel set up (see Usage), to install globally, run:

pixi global install micro_razers

to add into an existing workspace instead, run:

pixi add micro_razers

In the latter case, make sure to first add bioconda and conda-forge to the channels considered by the workspace:

pixi workspace channel add conda-forge
pixi workspace channel add bioconda

Conda¶

With conda installed and the Bioconda channel set up (see Usage), to install into an existing and activated environment, run:

conda install micro_razers

Alternatively, to install into a new environment, run:

conda create -n envname micro_razers

with envname being the name of the desired environment.

Container¶

Alternatively, every Bioconda package is available as a container image for usage with your preferred container runtime. For e.g. docker, run:

docker pull quay.io/biocontainers/micro_razers:<tag>

(see micro_razers/tags for valid values for <tag>).

Integrated deployment¶

Finally, note that many scientific workflow management systems directly integrate both conda and container based software deployment. Thus, workflow steps can be often directly annotated to use the package, leading to automatic deployment by the respective workflow management system, thereby improving reproducibility and transparency. Check the documentation of your workflow management system to find out about the integration.

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/micro_razers/README.html)