recipe microview

Generate reports from taxonomic classification data

Homepage:

https://github.com/jvfe/microview

License:

BSD-3-Clause

Recipe:

/microview/meta.yaml

package microview

versions:

0.11.0-0,  0.10.1-0

depends click-option-group:

depends cython:

depends decorator:

depends frictionless:

>=4.32.0,<5

depends jinja2:

depends libgcc-ng:

>=12

depends numpy:

depends pandas:

depends plotly:

depends python:

>=3.12,<3.13.0a0

depends python_abi:

3.12.* *_cp312

depends rich:

depends rich-click:

depends scikit-bio:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install microview

and update with::

   mamba update microview

To create a new environment, run:

mamba create --name myenvname microview

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/microview:<tag>

(see `microview/tags`_ for valid values for ``<tag>``)

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