recipe midas

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

Homepage

https://github.com/snayfach/MIDAS

License

GPL / GPL-3.0

Recipe

/midas/meta.yaml

package midas

Versions

1.3.2-4,  1.3.2-3,  1.3.2-2,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.2-1,  1.2.2-0

Depends

• biopython

• bowtie2

• hs-blastn

• numpy

• pandas

• pysam

• python

• samtools >=1.4.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install midas

and update with:

conda update midas

or use the docker container:

docker pull quay.io/biocontainers/midas:<tag>

(see midas/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/midas/README.html)