- recipe midas
An integrated pipeline for estimating strain-level genomic variation from metagenomic data
- Homepage:
- License:
GPL / GPL-3.0
- Recipe:
- package midas¶
-
- Versions:
1.3.2-6
,1.3.2-5
,1.3.2-4
,1.3.2-3
,1.3.2-2
,1.3.2-0
,1.3.1-0
,1.3.0-0
,1.2.2-1
,1.3.2-6
,1.3.2-5
,1.3.2-4
,1.3.2-3
,1.3.2-2
,1.3.2-0
,1.3.1-0
,1.3.0-0
,1.2.2-1
,1.2.2-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install midas
and update with:
conda update midas
or use the docker container:
docker pull quay.io/biocontainers/midas:<tag>
(see midas/tags for valid values for
<tag>
)
Notes¶
MIDAS requires reference database that needs to be additionally downloaded and set, https://github.com/snayfach/MIDAS/blob/master/docs/ref_db.md.
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/midas/README.html)