recipe midas

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

Homepage

https://github.com/snayfach/MIDAS

License

GPL / GPL-3.0

Recipe

/midas/meta.yaml

package midas

(downloads) docker_midas

Versions

1.3.2-2, 1.3.2-0, 1.3.1-0, 1.3.0-0

Depends biopython

Depends bowtie2

Depends hs-blastn

Depends numpy

Depends pandas

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends samtools

>=1.4.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install midas

and update with:

conda update midas

or use the docker container:

docker pull quay.io/biocontainers/midas:<tag>

(see midas/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/midas/README.html)