recipe midas

An integrated pipeline for estimating strain-level genomic variation from metagenomic data

Homepage:

https://github.com/snayfach/MIDAS

License:

GPL / GPL-3.0

Recipe:

/midas/meta.yaml

package midas

(downloads) docker_midas

Versions:
1.3.2-61.3.2-51.3.2-41.3.2-31.3.2-21.3.2-01.3.1-01.3.0-01.2.2-1

1.3.2-61.3.2-51.3.2-41.3.2-31.3.2-21.3.2-01.3.1-01.3.0-01.2.2-11.2.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install midas

and update with:

conda update midas

or use the docker container:

docker pull quay.io/biocontainers/midas:<tag>

(see midas/tags for valid values for <tag>)

Notes

MIDAS requires reference database that needs to be additionally downloaded and set, https://github.com/snayfach/MIDAS/blob/master/docs/ref_db.md.

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