recipe mimeo

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.

Homepage:

https://github.com/Adamtaranto/mimeo

License:

MIT / MIT

Recipe:

/mimeo/meta.yaml

package mimeo

(downloads) docker_mimeo

versions:

1.1.2-0,  1.1.1-2,  1.1.1-1,  1.1.1-0

depends biopython:

>=1.70

depends pandas:

>=0.20.3

depends python:

>=3.8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mimeo

and update with::

   mamba update mimeo

To create a new environment, run:

mamba create --name myenvname mimeo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mimeo:<tag>

(see `mimeo/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mimeo/README.html)