recipe mimseq

Modification-induced misincorporation tRNA sequencing.

Homepage:

https://github.com/nedialkova-lab/mim-tRNAseq

License:

GPL3 / GPL-3.0-only

Recipe:

/mimseq/meta.yaml

package mimseq

Versions:

1.3.2-0,  1.3-0,  1.2.1-0,  1.2-0,  1.1.7-0,  1.1.6-0,  1.1.4-0,  1.1.2-0,  1.1.1-0, 

1.3.2-0,  1.3-0,  1.2.1-0,  1.2-0,  1.1.7-0,  1.1.6-0,  1.1.4-0,  1.1.2-0,  1.1.1-0,  1.1-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0-0,  0.4-0,  0.3.4.9-0,  0.3.4.8-0,  0.3.4.7-0,  0.3.4.5-0,  0.3.4.3-0,  0.3.4.1-0,  0.3.4-0,  0.3.3.2-0,  0.3.3-0,  0.3.2-0,  0.3.1-0,  0.2.6-0,  0.2.5.6-0,  0.2.5.5-1,  0.2.5.5-0,  0.2.5.4-0,  0.2.5.3-0

Depends:

• bedtools >=2.30.0

• bioconductor-complexheatmap >=2.2.0

• bioconductor-deseq2 >=1.26.0

• biopython >=1.79

• blast 2.10.1.*

• gmap 2019.02.26.*

• infernal >=1.1.4

• matplotlib-base >=3.4.2

• numpy >=1.21.1

• pandas >=1.3.1

• pybedtools >=0.8.2

• pyfiglet >=0.8.post1

• pysam >=0.16.0.1

• python 3.7.*

• r-base >=4.1

• r-calibrate >=1.7.7

• r-devtools >=2.4.1

• r-dplyr >=1.0.6

• r-ggplot2 >=3.3.5

• r-ggpol >=0.0.7

• r-gridextra >=2.3

• r-pheatmap >=1.0.12

• r-plyr >=1.8.6

• r-reshape2 >=1.4.4

• r-tidyverse >=1.3.0

• requests >=2.26.0

• samtools >=1.11

• seaborn-base >=0.11.1

• statsmodels >=0.13.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mimseq

and update with:

conda update mimseq

or use the docker container:

docker pull quay.io/biocontainers/mimseq:<tag>

(see mimseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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