- recipe mindthegap
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.
- Homepage:
- License:
AGPL-3.0-or-later
- Recipe:
- Links:
biotools: mindthegap, doi: 10.1093/bioinformatics/btu545
- package mindthegap¶
-
- Versions:
2.3.0-1
,2.3.0-0
,2.2.3-1
,2.2.3-0
,2.2.2-1
,2.2.2-0
,2.2.1-1
,2.2.1-0
,2.2.0-0
- Depends:
libgcc-ng
>=12
libstdcxx-ng
>=12
libzlib
>=1.2.12,<1.3.0a0
zlib
>=1.2.12,<1.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install mindthegap
and update with:
conda update mindthegap
or use the docker container:
docker pull quay.io/biocontainers/mindthegap:<tag>
(see mindthegap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/mindthegap/README.html)