recipe mindthegap

MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.

Homepage

https://github.com/GATB/mindthegap

License

file

Recipe

/mindthegap/meta.yaml

Links

biotools: mindthegap, doi: 10.1093/bioinformatics/btu545

package mindthegap

(downloads) docker_mindthegap

Versions

2.2.2-02.2.1-12.2.1-02.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mindthegap

and update with:

conda update mindthegap

or use the docker container:

docker pull quay.io/biocontainers/mindthegap:<tag>

(see mindthegap/tags for valid values for <tag>)