recipe mindthegap

MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.

Homepage:

https://github.com/GATB/mindthegap

License:

AGPL-3.0-or-later

Recipe:

/mindthegap/meta.yaml

Links:

biotools: mindthegap, doi: 10.1093/bioinformatics/btu545

package mindthegap

Versions:

2.3.0-1,  2.3.0-0,  2.2.3-1,  2.2.3-0,  2.2.2-1,  2.2.2-0,  2.2.1-1,  2.2.1-0,  2.2.0-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• zlib >=1.2.12,<1.3.0a0

Required By:

• minys

• mtglink

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mindthegap

and update with:

conda update mindthegap

or use the docker container:

docker pull quay.io/biocontainers/mindthegap:<tag>

(see mindthegap/tags for valid values for <tag>)

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