recipe mindthegap

MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. MindTheGap can also be used as a genome assembly finishing tool, it can fill the gaps between a set of input contigs without any a priori on their relative order and orientation.

Homepage

https://github.com/GATB/mindthegap

License

file

Recipe

/mindthegap/meta.yaml

Links

biotools: mindthegap, doi: 10.1093/bioinformatics/btu545

package mindthegap

Versions

2.2.2-0,  2.2.1-1,  2.2.1-0,  2.2.0-0

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• zlib >=1.2.11,<1.3.0a0

Required By

• mtglink

• minys

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mindthegap

and update with:

conda update mindthegap

or use the docker container:

docker pull quay.io/biocontainers/mindthegap:<tag>

(see mindthegap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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