recipe minia

Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.

Homepage:

https://github.com/GATB/minia

License:

file

Recipe:

/minia/meta.yaml

Links:

biotools: minia

package minia

(downloads) docker_minia

versions:

3.2.6-3,  3.2.6-2,  3.2.6-1,  3.2.6-0,  3.2.4-1,  3.2.4-0,  3.2.3-0,  3.2.2-0,  3.2.1-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minia

and update with::

   mamba update minia

To create a new environment, run:

mamba create --name myenvname minia

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/minia:<tag>

(see `minia/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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