recipe minialign

Fast and accurate alignment tool for PacBio and Nanopore long reads.

Homepage:

https://github.com/ocxtal/minialign

License:

MIT

Recipe:

/minialign/meta.yaml

Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.

package minialign

(downloads) docker_minialign

Versions:

0.5.3-2,  0.5.3-1,  0.5.3-0,  0.5.2-0,  0.4.2-1,  0.4.2-0,  0.4.0-0,  0.3.1-0

Depends:

  • zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install minialign

and update with:

conda update minialign

or use the docker container:

docker pull quay.io/biocontainers/minialign:<tag>

(see minialign/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minialign/README.html)