- recipe minialign
Fast and accurate alignment tool for PacBio and Nanopore long reads.
Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.
- package minialign¶
- Required By:
With an activated Bioconda channel (see set-up-channels), install with:
conda install minialign
and update with:
conda update minialign
or use the docker container:
docker pull quay.io/biocontainers/minialign:<tag>
(see minialign/tags for valid values for