recipe minialign

Fast and accurate alignment tool for PacBio and Nanopore long reads.

Homepage

https://github.com/ocxtal/minialign

License

MIT

Recipe

/minialign/meta.yaml

Minialign is a little bit fast and moderately accurate nucleotide sequence alignment tool designed for PacBio and Nanopore long reads. It is built on three key algorithms, minimizer-based index of the minimap overlapper, array-based seed chaining, and SIMD-parallel Smith-Waterman-Gotoh extension.

package minialign

(downloads) docker_minialign

Versions

0.5.3-2, 0.5.3-1, 0.5.3-0, 0.5.2-0, 0.4.2-1, 0.4.2-0, 0.4.0-0, 0.3.1-0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install minialign

and update with:

conda update minialign

or use the docker container:

docker pull quay.io/biocontainers/minialign:<tag>

(see minialign/tags for valid values for <tag>)