recipe minimac4

Computationally efficient genotype imputation

Homepage:

https://github.com/statgen/Minimac4

License:

GPL-3.0-or-later

Recipe:

/minimac4/meta.yaml

Minimac4 is a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac/mininac2/minimac3.

package minimac4

versions:

4.1.6-0

depends bcftools:

>=1.21,<2.0a0

depends cget:

depends libgcc:

>=12

depends libstdcxx:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends xz:

>=5.2.6,<6.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minimac4

and update with::

   mamba update minimac4

To create a new environment, run:

mamba create --name myenvname minimac4

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/minimac4:<tag>

(see `minimac4/tags`_ for valid values for ``<tag>``)

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Link to this page

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