recipe minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences.

Homepage:

https://github.com/lh3/minimap2

Documentation:

https://lh3.github.io/minimap2/minimap2.html

License:

MIT / MIT

Recipe:

/minimap2/meta.yaml

Links:

biotools: minimap2, usegalaxy-eu: minimap2, doi: 10.1093/bioinformatics/bty191

package minimap2

(downloads) docker_minimap2

versions:
2.29-0,  2.28-4,  2.28-3,  2.28-2,  2.28-1,  2.28-0,  2.27-1,  2.27-0,  2.26-2, 

2.29-0,  2.28-4,  2.28-3,  2.28-2,  2.28-1,  2.28-0,  2.27-1,  2.27-0,  2.26-2,  2.26-1,  2.26-0,  2.25-0,  2.24-1,  2.24-0,  2.23-0,  2.22-0,  2.21-0,  2.20-0,  2.19-0,  2.18-0,  2.17-4,  2.17-3,  2.17-2,  2.17-1,  2.17-0,  2.16-1,  2.16-0,  2.15-1,  2.15-0,  2.14-0,  2.13-0,  2.12-0,  2.11-0,  2.10-1,  2.9-1,  2.8-1,  2.8-0,  2.7-1,  2.7-0,  2.6.1-0,  2.6-0,  2.5-0,  2.4-0,  2.3-0,  2.1.1-0,  2.1.r311-0,  2.0.r191-0

depends k8:

depends libgcc:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minimap2

and update with::

   mamba update minimap2

To create a new environment, run:

mamba create --name myenvname minimap2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/minimap2:<tag>

(see `minimap2/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minimap2/README.html)