recipe minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences.

Homepage:

https://github.com/lh3/minimap2

License:

MIT

Recipe:

/minimap2/meta.yaml

package minimap2

Versions:

2.26-1,  2.26-0,  2.25-0,  2.24-1,  2.24-0,  2.23-0,  2.22-0,  2.21-0,  2.20-0, 

2.26-1,  2.26-0,  2.25-0,  2.24-1,  2.24-0,  2.23-0,  2.22-0,  2.21-0,  2.20-0,  2.19-0,  2.18-0,  2.17-4,  2.17-3,  2.17-2,  2.17-1,  2.17-0,  2.16-1,  2.16-0,  2.15-1,  2.15-0,  2.14-0,  2.13-0,  2.12-0,  2.11-0,  2.10-1,  2.9-1,  2.8-1,  2.8-0,  2.7-1,  2.7-0,  2.6.1-0,  2.6-0,  2.5-0,  2.4-0,  2.3-0,  2.1.1-0,  2.1.r311-0,  2.0.r191-0

Depends:

• k8

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• genomics-data-index

• deepmod

• ragtag

• emu

• proovframe

• purge_haplotigs

• pathogen-profiler

• milonga

• rebaler

• gnuvid

• sensv

• medaka

• piranha-polio

• metalign

• hapsolo

• svjedi

• mhc-annotation

• msi

• telr

• tbpore

• tapestry

• nanomod

• ngless

• pasa

• viralflye

• masurca

• funannotate

• notramp

• bismark

• sat-bsa

• megapath

• seqscreen

• quatradis

• purge_dups

• strainflye

• debreak

• homopolish

• trycycler

• fec

• aquila_stlfr

• nanomonsv

• goldrush

• nextpolish

• consent

• svim

• lorikeet-genome

• visor

• knot-asm-analysis

• confindr

• hiline

• ngs_te_mapper2

• shigatyper

• anchorwave

• artic

• liftoff

• xtea

• plassembler

• flair

• pb-assembly

• snippy

• hocort

• irma

• anglerfish

• metaplatanus

• inspector

• canu

• varifier

• irissv

• nanosim

• amptk

• freddie

• coverm

• tritimap

• pangolin

• aquilasv

• isoquant

• mars

• vulcan

• galru

• vadr

• elector

• minipolish

• hapog

• knock-knock

• quast

• aquila

• mitgard

• pomoxis

• tigmint

• zga

• hafez

• tgsgapcloser

• ptgaul

• dipcall

• nanovar

• pecat

• rosella

• vechat

• rnabloom

• methylpy

• ultra_bioinformatics

• greenhill

• lotus2

• vsnp3

• xmatchview

• pbipa

• haslr

• hicstuff

• sanitizeme

• c4counter

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install minimap2

and update with:

conda update minimap2

or use the docker container:

docker pull quay.io/biocontainers/minimap2:<tag>

(see minimap2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minimap2/README.html)