recipe mintie

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

Homepage

https://github.com/Oshlack/MINTIE

License

MIT

Recipe

/mintie/meta.yaml

package mintie

Versions

0.3.9-0

Depends

• bbmap

• bedtools

• bioconductor-edger

• bioconductor-tximport

• biopython

• bpipe

• fastuniq

• fastx_toolkit

• gmap >=2021.06.04

• intervaltree_bio

• numpy

• pandas

• pybedtools

• pysam

• python

• r-base

• r-data.table

• r-dplyr

• r-jsonlite

• r-readr

• r-statmod

• salmon

• samtools

• soapdenovo-trans 1.03.*

• tbb 2020.2.*

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mintie

and update with:

conda update mintie

or use the docker container:

docker pull quay.io/biocontainers/mintie:<tag>

(see mintie/tags for valid values for <tag>)

Download stats

Link to this page

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