recipe minute

MINUTE-ChIP data analysis workflow






package minute

(downloads) docker_minute



depends bedtools:


depends bowtie2:


depends cutadapt:


depends deeptools:


depends fastqc:


depends igvtools:


depends je-suite:


depends multiqc:


depends picard:


depends python:


depends r-base:


depends r-dplyr:


depends r-ggplot2:


depends ruamel.yaml:

depends samtools:


depends snakemake-minimal:


depends sra-tools:


depends xopen:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install minute

and update with::

   mamba update minute

To create a new environment, run:

mamba create --name myenvname minute

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `minute/tags`_ for valid values for ``<tag>``)

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