recipe minute

MINUTE-ChIP data analysis workflow

Homepage:

https://github.com/NBISweden/minute/

License:

MIT

Recipe:

/minute/meta.yaml

package minute

Versions:

0.3.3-0,  0.2.0-0

Depends:

• bedtools >=2.30.0

• bowtie2 >=2.4.4

• cutadapt >=3.7

• deeptools >=3.5.0

• fastqc >=0.11.9

• igvtools >=2.5.3

• je-suite >=2.0.RC

• multiqc 1.13.*

• picard >=2.26.0

• python >=3.7

• r-base >=4.0.0

• r-dplyr >=1.0.0

• r-ggplot2 >=3.3.0

• ruamel.yaml

• samtools >=1.13

• snakemake-minimal >=7.22.0

• sra-tools >=2.11.0

• xopen >=1.2.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install minute

and update with:

conda update minute

or use the docker container:

docker pull quay.io/biocontainers/minute:<tag>

(see minute/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minute/README.html)