- recipe minute
MINUTE-ChIP data analysis workflow
- Homepage:
- Documentation:
- Developer docs:
- License:
MIT / MIT
- Recipe:
- package minute¶
- versions:
0.10.1-0,0.10.0-0,0.9.0-0,0.8.0-0,0.6.0-0,0.4.0-0,0.3.3-0,0.2.0-0- depends bedtools:
>=2.30.0- depends bowtie2:
>=2.5.3- depends cutadapt:
>=3.7- depends deeptools:
>=3.5.0- depends fastqc:
>=0.11.9- depends igvtools:
>=2.5.3- depends je-suite:
>=2.0.RC- depends multiqc:
1.17.*- depends picard:
>=2.26.0- depends python:
>=3.7- depends r-base:
>=4.0.0- depends r-dplyr:
>=1.0.0- depends r-ggplot2:
>=3.3.0- depends ruamel.yaml:
- depends samtools:
>=1.13- depends snakemake-minimal:
>=7.22.0- depends sra-tools:
>=2.11.0- depends strobealign:
>=0.13.0- depends xopen:
>=1.2.0- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install minute and update with:: mamba update minute
To create a new environment, run:
mamba create --name myenvname minute
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/minute:<tag> (see `minute/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/minute/README.html)
