recipe minvar

A tool to detect minority variants in HIV-1 and HCV populations

Homepage

https://git.io/minvar

License

Custom

Recipe

/minvar/meta.yaml

package minvar

(downloads) docker_minvar

Versions

2.2.2-0, 2.2.1-0, 2.2-0, 2.1.3-0, 2.1.2-1, 2.1.2-0, 2.1.1-2, 2.1.1-1, 2.1.1-0, 2.1-1, 2.1-0, 2.0-1, 2.0-0, 1.2b-1, 1.2b-0, 1.2a3-1, 1.2a3-0

Depends bedtools

Depends biopython

Depends blast

>=2.3

Depends bwa

Depends emboss

Depends htslib

Depends lofreq

>=2.1.3.1

Depends pandas

Depends pandoc

Depends python

>=3.5,<3.6.0a0

Depends samtools

>=1.3

Depends seqtk

Depends setuptools_scm_git_archive

Depends sierrapy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install minvar

and update with:

conda update minvar

or use the docker container:

docker pull quay.io/biocontainers/minvar:<tag>

(see minvar/tags for valid values for <tag>)