recipe minvar

A tool to detect minority variants in HIV-1 and HCV populations

Homepage:

https://git.io/minvar

License:

Custom

Recipe:

/minvar/meta.yaml

package minvar

Versions:

2.2.2-1,  2.2.2-0,  2.2.1-0,  2.2-0,  2.1.3-0,  2.1.2-1,  2.1.2-0,  2.1.1-2,  2.1.1-1, 

2.2.2-1,  2.2.2-0,  2.2.1-0,  2.2-0,  2.1.3-0,  2.1.2-1,  2.1.2-0,  2.1.1-2,  2.1.1-1,  2.1.1-0,  2.1-1,  2.1-0,  2.0-1,  2.0-0,  1.2b-1,  1.2b-0,  1.2a3-1,  1.2a3-0

Depends:

• bedtools

• biopython

• blast >=2.3

• bwa

• emboss

• htslib

• lofreq >=2.1.3.1

• pandas

• pandoc

• python >=3

• samtools >=1.3

• seqtk

• setuptools_scm_git_archive

• sierrapy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install minvar

and update with:

conda update minvar

or use the docker container:

docker pull quay.io/biocontainers/minvar:<tag>

(see minvar/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/minvar/README.html)