recipe mira

MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads)

Homepage:

https://sourceforge.net/p/mira-assembler/wiki/Home/

License:

GNU General Public License v2 or later (GPLv2+)

Recipe:

/mira/meta.yaml

Links:

biotools: mira

package mira

(downloads) docker_mira

versions:

4.9.6-1,  4.9.6-0,  4.9.5-1,  4.9.5-0,  4.0.2-3,  4.0.2-2,  4.0.2-1,  3.4.1.1-1,  3.4.1.1-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mira

and update with::

   mamba update mira

To create a new environment, run:

mamba create --name myenvname mira

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mira:<tag>

(see `mira/tags`_ for valid values for ``<tag>``)

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Link to this page

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