recipe mirdeep2

A completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs

Homepage

https://www.mdc-berlin.de/8551903/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep

License

academic

Recipe

/mirdeep2/meta.yaml

package mirdeep2

Versions

2.0.1.3-1,  2.0.1.3-0,  2.0.1.2-0,  2.0.0.8-5,  2.0.0.8-4,  2.0.0.8-3,  2.0.0.8-2,  2.0.0.8-1,  2.0.0.8-0, 

2.0.1.3-1,  2.0.1.3-0,  2.0.1.2-0,  2.0.0.8-5,  2.0.0.8-4,  2.0.0.8-3,  2.0.0.8-2,  2.0.0.8-1,  2.0.0.8-0,  2.0.0.7-8,  2.0.0.7-7,  2.0.0.7-6,  2.0.0.7-5,  2.0.0.7-4,  2.0.0.7-3,  2.0.0.7-2,  2.0.0.7-1

Depends

• bowtie

• perl

• perl-compress-raw-zlib

• perl-font-ttf

• perl-lwp-simple

• perl-pdf-api2

• randfold

• viennarna

Required By

• cap-mirseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mirdeep2

and update with:

conda update mirdeep2

or use the docker container:

docker pull quay.io/biocontainers/mirdeep2:<tag>

(see mirdeep2/tags for valid values for <tag>)

Download stats

Link to this page

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