recipe mirmachine

A command line to tool detect miRNA homologs in genome sequences.

Homepage:

https://github.com/sinanugur/MirMachine

Documentation:

https://github.com/sinanugur/MirMachine/blob/master/README.md

License:

MIT / MIT

Recipe:

/mirmachine/meta.yaml

package mirmachine

Versions:

0.2.12-0,  0.2.11.2022-0,  0.2.11.2-0,  0.2.11.1-0,  0.2.11-1,  0.2.11-0,  0.2.10-0,  0.1.31-0,  0.1.2-0

Depends:

• appdirs >=1.4.3

• attrs >=19.3.0

• bedtools >=2.29.2

• biopython >=1.76

• configargparse >=1.1

• coreutils >=8.31

• datrie

• decorator >=4.4.2

• docopt >=0.6.2

• docutils >=0.16

• gawk >=5.0.1

• gitdb >=4.0.2

• gitpython >=3.1.0

• importlib-metadata >=1.5.0

• infernal 1.1.2

• jsonschema >=3.2.0

• moreutils >=0.5.7

• nbformat >=5.0.4

• numpy >=1.18

• psutil >=5.7.0

• pyrsistent >=0.15.7

• python

• python-newick >=1.0.0

• pyyaml

• ratelimiter

• rich >=10.16.1

• samtools >=1.6

• smmap >=3.0.1

• snakemake-minimal >=5.11.1

• toposort >=1.5

• traitlets >=4.3.3

• wrapt >=1.12.1

• zipp >=3.1.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mirmachine

and update with:

conda update mirmachine

or use the docker container:

docker pull quay.io/biocontainers/mirmachine:<tag>

(see mirmachine/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mirmachine/README.html)