- recipe mirnature
MiRNAture improves on ideas from MIRfix and integrates it with homology search. miRNAture is specifically designed to identify and annotate metazoan miRNAs in a homology-based setting and is complementary to tools and pipelines that extract miRNA candidates from small RNA-seq data
- Homepage:
- License:
GPL / GPL-3.0
- Recipe:
- package mirnature¶
-
- Versions:
1.1-2
,1.1-1
,1.1-0
,1.0-5
,1.0-4
,1.0-3
,1.0-2
,1.0-1
,1.0-0
- Depends:
biopython
>=1.78
blast
>=2.13.0
clustalo
>=1.2.4
hmmer
>=3.3.2
infernal
>=1.1.4
mirfix
>=2.1.1
parallel
>=20220922
perl
>=5.32.1
perl
>=5.32.1,<6.0a0 *_perl5
perl-bioperl
>=1.6.924
perl-file-copy-recursive
>=0.45
perl-io-string
>=1.08
perl-io-stringy
>=2.113
perl-module-build
>=0.4224
perl-module-implementation
>=0.09
perl-moose
>=2.2201
perl-moosex-types-path-class
>=0.09
perl-statistics-r
>=0.34
perl-yaml-tiny
>=1.73
pyfaidx
>=0.7.1
python
>3
r-base
>=4.1.0
r-dplyr
>=1.0.10
rmblast
>=2.9.0
viennarna
>=2.4.15
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install mirnature
and update with:
conda update mirnature
or use the docker container:
docker pull quay.io/biocontainers/mirnature:<tag>
(see mirnature/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/mirnature/README.html)