recipe mirnature

MiRNAture improves on ideas from MIRfix and integrates it with homology search. miRNAture is specifically designed to identify and annotate metazoan miRNAs in a homology-based setting and is complementary to tools and pipelines that extract miRNA candidates from small RNA-seq data

Homepage:

https://github.com/Bierinformatik/miRNAture

License:

GPL / GPL-3.0

Recipe:

/mirnature/meta.yaml

package mirnature

Versions:

1.1-2,  1.1-1,  1.1-0,  1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1,  1.0-0

Depends:

• biopython >=1.78

• blast >=2.13.0

• clustalo >=1.2.4

• hmmer >=3.3.2

• infernal >=1.1.4

• mirfix >=2.1.1

• parallel >=20220922

• perl >=5.32.1

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bioperl >=1.6.924

• perl-file-copy-recursive >=0.45

• perl-io-string >=1.08

• perl-io-stringy >=2.113

• perl-module-build >=0.4224

• perl-module-implementation >=0.09

• perl-moose >=2.2201

• perl-moosex-types-path-class >=0.09

• perl-statistics-r >=0.34

• perl-yaml-tiny >=1.73

• pyfaidx >=0.7.1

• python >3

• r-base >=4.1.0

• r-dplyr >=1.0.10

• rmblast >=2.9.0

• viennarna >=2.4.15

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mirnature

and update with:

conda update mirnature

or use the docker container:

docker pull quay.io/biocontainers/mirnature:<tag>

(see mirnature/tags for valid values for <tag>)

Download stats

Link to this page

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