recipe miru-hero

Compute MIRU and Spoligotype from a M. tuberculosis genome

Homepage:

https://gitlab.com/LPCDRP/miru-hero

License:

GPL / GPL-3.0-or-later

Recipe:

/miru-hero/meta.yaml

Calculate the number and position of MIRU and Spoligotype sequences from a FASTA file, output results to a file, and print octal Spoligotype results, MIRU results, and lineage results to screen

package miru-hero

(downloads) docker_miru-hero

versions:

0.10.0-0

depends biopython:

<1.79

depends blast:

depends python:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install miru-hero

and update with::

   mamba update miru-hero

To create a new environment, run:

mamba create --name myenvname miru-hero

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/miru-hero:<tag>

(see `miru-hero/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/miru-hero/README.html)