recipe mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

Homepage:

https://github.com/linzhi2013/MitoZ

License:

GPLv3

Recipe:

/mitoz/meta.yaml

package mitoz

Versions:

3.5-0,  3.4-1,  3.4-0,  3.3-1,  3.3-0,  3.2-0,  3.1-0,  3.0-0

Depends:

• biopython

• blast

• bs4

• bwa

• circos 0.69.*

• coreutils

• ete3 >=3.1.2

• fastp

• hmmer 3.1b2.*

• html5lib

• infernal 1.1.1.*

• libgd

• megahit

• openjdk

• perl 5.32.*

• perl-app-cpanminus

• perl-bioperl

• perl-clone

• perl-config-general

• perl-encode-locale

• perl-list-moreutils

• perl-math-bezier

• perl-math-round

• perl-math-vecstat

• perl-params-validate

• perl-set-intspan

• perl-statistics-basic

• perl-statistics-descriptive

• pkgconfig

• python >=3.6,<3.10

• requests

• samtools

• seqkit

• spades >=3.15.4

• tbl2asn

• wise2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install mitoz

and update with:

conda update mitoz

or use the docker container:

docker pull quay.io/biocontainers/mitoz:<tag>

(see mitoz/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mitoz/README.html)