recipe mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

Homepage:

https://github.com/linzhi2013/MitoZ

License:

GPLv3

Recipe:

/mitoz/meta.yaml

package mitoz

versions:

3.6-1,  3.6-0,  3.5-0,  3.4-1,  3.4-0,  3.3-1,  3.3-0,  3.2-0,  3.1-0, 

3.6-1,  3.6-0,  3.5-0,  3.4-1,  3.4-0,  3.3-1,  3.3-0,  3.2-0,  3.1-0,  3.0-0

depends biopython:

depends blast:

depends bs4:

depends bwa:

depends circos:

0.69.*

depends coreutils:

depends ete3:

>=3.1.2

depends fastp:

depends hmmer:

3.1b2.*

depends html5lib:

depends infernal:

1.1.1.*

depends libgd:

depends megahit:

depends openjdk:

depends perl:

5.32.*

depends perl-app-cpanminus:

depends perl-bioperl:

depends perl-clone:

depends perl-config-general:

depends perl-encode-locale:

depends perl-list-moreutils:

depends perl-math-bezier:

depends perl-math-round:

depends perl-math-vecstat:

depends perl-params-validate:

depends perl-set-intspan:

depends perl-statistics-basic:

depends perl-statistics-descriptive:

depends pkgconfig:

depends python:

>=3.6,<3.9

depends requests:

depends samtools:

depends seqkit:

depends spades:

>=3.15.4

depends tbl2asn:

depends tiara:

depends wise2:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mitoz

and update with::

   mamba update mitoz

To create a new environment, run:

mamba create --name myenvname mitoz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mitoz:<tag>

(see `mitoz/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mitoz/README.html)