recipe mlrho

Takes as input a file with assembled reads from a single diploid individual and returns maximum likelihood estimates of the population mutation rate, , the sequencing error , the zygosity correlation, and the population recombination rate.

Homepage:

http://guanine.evolbio.mpg.de/mlRho/

License:

file

Recipe:

/mlrho/meta.yaml

Links:

biotools: mlRho, doi: 10.1111/j.1365-294X.2009.04482.x

package mlrho

versions:

2.9-8,  2.9-7,  2.9-6,  2.9-5,  2.9-4,  2.9-3,  2.9-2,  2.9-1,  2.9-0

depends gsl:

>=2.7,<2.8.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install mlrho

and update with::

   mamba update mlrho

To create a new environment, run:

mamba create --name myenvname mlrho

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/mlrho:<tag>

(see `mlrho/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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